NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
15,054.0 |
| Mean read quality |
27.6 |
| Median read length |
14,900.0 |
| Median read quality |
31.4 |
| Number of reads |
15,160.0 |
| Read length N50 |
15,385.0 |
| STDEV read length |
2,678.1 |
| Total bases |
228,218,200.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
15160 (100.0%) 228.2Mb |
| >Q15 |
15160 (100.0%) 228.2Mb |
| >Q20 |
15160 (100.0%) 228.2Mb |
| >Q25 |
12149 (80.1%) 181.6Mb |
| >Q30 |
8623 (56.9%) 126.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (88) |
| 2 |
93.0 (90) |
| 3 |
93.0 (87) |
| 4 |
88.7 (11768) |
| 5 |
84.0 (8782) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35972 (22.3) |
| 2 |
35722 (22.2) |
| 3 |
32913 (22.2) |
| 4 |
30500 (28.0) |
| 5 |
30013 (22.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot