NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
18,575.1 |
| Mean read quality |
10.7 |
| Median read length |
7,770.0 |
| Median read quality |
11.2 |
| Number of reads |
30,733.0 |
| Read length N50 |
46,823.0 |
| STDEV read length |
26,796.7 |
| Total bases |
570,870,000.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
21738 (70.7%) 403.7Mb |
| >Q15 |
65 (0.2%) 0.1Mb |
| >Q20 |
0 (0.0%) 0.0Mb |
| >Q25 |
0 (0.0%) 0.0Mb |
| >Q30 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (1) |
| 2 |
17.2 (447) |
| 3 |
17.0 (319) |
| 4 |
16.2 (203) |
| 5 |
16.0 (590) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
399950 (9.7) |
| 2 |
308911 (12.7) |
| 3 |
303709 (8.4) |
| 4 |
291911 (10.9) |
| 5 |
284565 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot